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--- publications [2019/04/08 14:35]
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+++ publications [2025/06/06 11:05] (current)
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+~~NOTOC~~
 ====== Publications ======
 See also the [[http://www.mic.uni-luebeck.de/publications.html|group's publication page.]]
+===== 2025 =====
+{{::brain-svf.png }}**Stationary Velocity Fields on Matrix Groups for
+Deformable Image Registration**\\
+//Johannes Bostelmann, Ole Gildemeister, Jan Lellmann,// (in press) 2025.\\
+[[https://arxiv.org/pdf/2410.10997|Preprint]]
+<WRAP clear/>
+{{::respiratory-motion.png }}**Time-Continuous Sliding Motion Image Registration Using Stationary Velocity Fields for Respiratory Motion Interpolation**\\
+//Ole Gildemeister, Johannes Bostelmann, Pia F. Schulz, Andra Oltmann, Phillip Rostalski, Jan Modersitzki, Jan Lellmann,// Scale Space Var. Meth. Comp. Vis. (SSVM) 2025.\\
+[[https://link.springer.com/chapter/10.1007/978-3-031-92369-2_31|Springer]]
+<WRAP clear/>
+{{::respiratory.png }}**Image Registration for a Dynamic Breathing Model**\\
+//Pia F. Schulz, Andra Oltmann, Johannes Bostelmann, Ole Gildemeister, Franz Wegner, Jan Lellmann, Philipp Rostalski, Jan Modersitzki ,// BVM Workshop, 2025.\\
+[[https://link.springer.com/chapter/10.1007/978-3-031-92369-2_31|Springer]]
+<WRAP clear/>
+{{::potential.png }}**Simulation of Diaphragmatic Motor Unit Action Potentials Throughout the Respiratory Cycle Using a Dynamic Breathing Model**\\
+//Andra Oltmann, Ole Gildemeister, Johannes Bostelmann, Pia F. Schulz, Jan Graßhoff, Franz Wegner, Alex Frydrychowicz, Jan Lellmann, Jan Modersitzki, Tobias Knopp, Philipp Rostalski, // EMBC 2025.\\
+[[https://embc.embs.org/2025/|in press (conference homepage)]]
+<WRAP clear/>
+===== 2024 =====
+{{::protein.png }}**Riemannian geometry for efficient analysis of protein dynamics data**\\
+//Willem Diepeveen, Carlos Esteve-Yagüe, Jan Lellmann, Ozan Öktem, Carola-Bibiane Schönlieb,//  Proceedings of the National Academy of Sciences (PNAS), 2024.\\
+[[https://arxiv.org/pdf/2308.07818|pdf (preprint)]] | [[https://dx.doi.org/10.1073/pnas.2318951121|PNAS]]
+<WRAP clear/>
+{{::imsis2024-120.png }}**Subtyping of rare types of gastric carcinomas and
+organoids for diagnostics using MALDI imaging**\\
+//Pia Hönscheid, Linna Sommer, Patrick Moller Jensen, Jan Lellmann, Christian Sperling, Daniel
+Stange, Daniela Aust, Herbert Thiele, Gustavo Baretton,// Conference on Mass Spectrometry Imaging and Integrated Topics (IMSIS), 2024.\\
+(in preparation) | {{ :imsis_2024_muenster.pdf|Poster at IMSIS 2024}}
+<WRAP clear/>
+{{::hupo2024.png }}**Deep learning for MALDI-MSI: towards a common
+framework for transferable tissue diagnostics**\\
+//Patrick M. Jensen, Jan Lellmann, Herbert Thiele, Pia Hönscheid, Christian Sperling, Gustavo
+Baretton, Oliver Klein, Carsten Tschöpe, Karin Klingel,//  23rd Human Proteome World Congress (HUPO), 2024.\\
+(in preparation) | {{ :hupo_2024_patmjen_poster.pdf|Poster at HUPO 2024}}
+<WRAP clear/>
+===== 2023 =====
+{{::maxcut.png }}**A universal quantum algorithm for weighted maximum cut and Ising problems**\\
+//Natacha Kuete Meli, Florian Mannel, Jan Lellmann,// Quantum Information Processing, 2023\\
+[[https://arxiv.org/pdf/2306.06539|PDF (preprint)]] | [[https://link.springer.com/article/10.1007/s11128-023-04025-x|SpringerLink]]
+<WRAP clear/>
+{{::bednarski_ssvm2023.png }}**EmNeF: Neural Fields for Embedded Variational Problems in Imaging**\\
+//Danielle Bednarski, Jan Lellmann,// Scale Space Var. Meth. Comp. Vis. (SSVM) 2023.\\
+[[https://link.springer.com/chapter/10.1007/978-3-031-31975-4_11|SpringerLink]]
+<WRAP clear/>
+{{::kanter-lellmann-pancreas.png }}**Classification of Pancreatic Ductal Adenocarcinoma Using
+MALDI Mass Spectrometry Imaging Combined with Neural Networks**\\
+//Frederic Kanter, Jan Lellmann, Herbert Thiele, Steve Kalloger, David F. Schaeffer, Axel Wellmann, Oliver Klein,// Cancers, 2023.\\
+[[https://www.mdpi.com/2072-6694/15/3/686|web version]] | [[https://www.mdpi.com/2072-6694/15/3/686/pdf|pdf (open access)]]
+<WRAP clear/>
+{{::diepeveen-et-al-2022.png }}**Regularizing Orientation Estimation in Cryogenic Electron Microscopy Three-Dimensional Map Refinement through Measure-Based Lifting over Riemannian Manifolds**\\
+//Willem Diepeveen, Jan Lellmann, Ozan Öktem, Carola-Bibiane Schönlieb,// SIAM Journal on Imaging Sciences, 2023.\\
+[[https://doi.org/10.1137/22M1520773|SIAM]] | [[https://arxiv.org/pdf/2209.03045|pdf (preprint)]]
+<WRAP clear/>
+===== 2022 =====
+{{::bednarski-lellmann-scale-space.png }} **Inverse Scale Space Iterations for Non-Convex Variational Problems: The Continuous and Discrete Case
+**\\
+//D. Bednarski, J. Lellmann,//
+Journal of Mathematical Imaging and Vision, 2022.\\
+[[https://link.springer.com/article/10.1007/s10851-022-01125-8|SpringerLink]] | [[https://arxiv.org/pdf/2203.10865|pdf (preprint)]]
+<WRAP clear/>
+{{::dynamic-ot.png }} **On the Connection between Dynamical Optimal Transport and Functional Lifting**\\
+//T. Vogt, R. Haase, D. Bednarski, J. Lellmann,// Preprint, 2022\\
+[[https://arxiv.org/pdf/2007.02587.pdf|pdf (preprint)]]
+<WRAP clear/>
+{{::kanter-flexible-registration.png }} **A Flexible Meta Learning Model for Image Registration**\\
+//F. Kanter, J. Lellmann,// MIDL2022.\\
+[[https://openreview.net/pdf?id=DVvXkperT3t|pdf (OpenReview)]]
+<WRAP clear/>
+{{::kuete-meli-quantum-registration.png }} **An Iterative Quantum Approach for Transformation Estimation from Point Sets**\\
+//N. Kuete-Meli, F. Mannel, J. Lellmann,// CVPR2022.\\
+[[https://openaccess.thecvf.com/content/CVPR2022/papers/Meli_An_Iterative_Quantum_Approach_for_Transformation_Estimation_From_Point_Sets_CVPR_2022_paper.pdf|pdf (CVF)]]
+<WRAP clear/>
+{{::haase-lellmann-20-low-rank-sparse-image-registration.png }}  **Deformable Groupwise Image Registration using Low-Rank and Sparse Decomposition**\\
+//R. Haase, S. Heldmann, J. Lellmann,// Journal of Mathematical Imaging and Vision, 2022.\\
+[[https://link.springer.com/article/10.1007/s10851-021-01059-7|SpringerLink]] | [[https://arxiv.org/pdf/2001.03509|pdf (preprint)]]
+<WRAP clear/>
+===== 2021 =====
+{{::diepeveen-lellmann-manifold-optimization.png }} **An Inexact Semismooth Newton Method on Riemannian Manifolds with Application to Duality-Based Total Variation Denoising**\\
+//W. Diepeveen, J. Lellmann,// SIAM Journal on Imaging Sciences, 2021.\\
+[[https://epubs.siam.org/doi/abs/10.1137/21M1398513|SIAM]] | [[https://arxiv.org/pdf/2102.10309.pdf|pdf (preprint)]]\\
+//New:// Our algorithm is now built into the open source manifold optimization package [[https://manoptjl.org/stable/solvers/primal_dual_semismooth_Newton/|manopt.jl!]]
+<WRAP clear/>
+{{::inverse-scalespace-lifting.png }} **Inverse Scale Space Iterations for Non-Convex Variational Problems Using Functional Lifting**\\
+//D. Bednarski, J. Lellmann,//
+**//Best Student Paper Award at// [[https://ssvm2021.sciencesconf.org/|SSVM 2021.]]**\\
+[[https://doi.org/10.1007/978-3-030-75549-2_19|SpringerLink]] | [[https://arxiv.org/pdf/2105.02622|pdf (preprint)]]
+<WRAP clear/>
+{{::jmiv-title.jpg?140 }} **Journal of Mathematical Imaging and Vision: Special Issue on Scale Space and Variational Methods in Computer Vision**\\
+//J. Lellmann, J. Modersitzki (eds.)//\\
+[[https://link.springer.com/journal/10851/topicalCollection/AC_7af2165aa819d348746e540011c6150c|SpringerLink (online first)]]
+<WRAP clear/>
+===== 2020 =====
+{{::parisotto-et-al20-dem.png }} **Higher-Order Total Directional Variation: Imaging Applications**\\
+//S. Parisotto, J. Lellmann, S. Masnou, C.-B. Schönlieb,// SIAM Journal on Imaging Sciences, 2020.\\
+[[https://doi.org/10.1137/19M1239209|SIAM]] | [[https://arxiv.org/abs/1812.05023|pdf (preprint)]]
+<WRAP clear/>
+{{::corona-et-al-2020.png }}**A multi-contrast MRI approach to thalamus segmentation**\\
+//V. Corona, J. Lellmann, P. Nestor, C.-B. Schönlieb, J. Acosta-Cabronero,// Human Brain Mapping, 2020.\\
+[[http://dx.doi.org/10.1002/hbm.24933|Wiley Online]]
+<WRAP clear/>
+{{::vogt-et-al-2019-manifold-lifting.png }}
+**Lifting methods for manifold-valued variational problems**\\
+//T. Vogt, E. Strekalovskiy, D. Cremers, J. Lellmann,// Book chapter in Handbook of Variational Methods for Nonlinear Geometric Data, 2020.\\
+[[https://link.springer.com/chapter/10.1007/978-3-030-31351-7_3|SpringerLink]] | [[https://arxiv.org/pdf/1908.03776.pdf|pdf (preprint)]]
+<WRAP clear/>
 ===== 2019 =====
+{{::978-3-030-22368-7.jpg?140 }}**Scale Space and Variational Methods in Computer Vision SSVM 2019, 7th International Conference, Proceedings**\\
+//J. Lellmann, M. Burger, J. Modersitzki (Eds.),// Springer Lecture Notes in Computer Science (LNCS), 2019.\\
+[[https://link.springer.com/book/10.1007/978-3-030-22368-7|SpringerLink]]
+<WRAP clear/>
 {{::vogt-lellmann-ssvm-2019-higher-order-lifting.png }}
 **Functional Liftings of Vectorial Variational Problems with Laplacian Regularization**\\
-//T. Vogt, J. Lellmann,// SSVM 2019.\\
+//T. Vogt, J. Lellmann,// Scale Space Var. Meth. Comp. Vis. (SSVM), 2019.\\
+[[https://link.springer.com/chapter/10.1007/978-3-030-22368-7_44|SpringerLink]] |
 [[https://arxiv.org/pdf/1904.00898.pdf|pdf (preprint)]]
 <WRAP clear/>
@@ Line 15: / Line 157: @@
 {{::odf.png }}
 **Measure-Valued Variational Models with Applications to Diffusion-Weighted Imaging**\\
-//T. Vogt, J. Lellmann,// JMIV 2018 (online first).\\
+//T. Vogt, J. Lellmann,// Journal of Mathematical Imaging and Vision 2018.\\
 [[https://rdcu.be/UXqH|Springer full text]] | [[https://doi.org/10.1007/s10851-018-0827-8|SpringerLink]] | [[https://arxiv.org/pdf/1710.00798|pdf (preprint)]]\\
 <WRAP clear/>
@@ Line 40: / Line 182: @@
 {{:files:budelmann-deformable-registration.png }}
 **Fully-deformable 3D image registration in two seconds**\\
-//Daniel Budelmann, Lars König, Nils Papenberg, Jan Lellmann,// Accepted for oral presentation at BVM 2019\\
+//Daniel Budelmann, Lars König, Nils Papenberg, Jan Lellmann,// BVM 2019 (oral)\\
-[[https://arxiv.org/pdf/1812.06765.pdf|pdf (preprint)]]\\
+[[https://link.springer.com/chapter/10.1007/978-3-658-25326-4_67|SpringerLink]] | [[https://arxiv.org/pdf/1812.06765.pdf|pdf (preprint)]]\\
-<WRAP clear/>
-{{::corona-qsm.png }}
-**A multi-contrast MRI approach to thalamus segmentation**\\
-//Veronica Corona, Jan Lellmann, Peter Nestor, Carola-Bibiane Schönlieb, Julio Acosta-Cabronero,// To appear.\\
 <WRAP clear/>
@@ Line 103: / Line 240: @@
 <WRAP clear/>
-{{::lellmann-siam-qvis.png }}**Solving QVIs for Image Denoising with Adaptive Constraint Sets**\\
+{{::lellmann-siam-qvis.png }}**Solving Quasi-Variational Inequalities for Image Restoration with Adaptive Constraint Sets**\\
-//F. Lenzen, J. Lellmann, F. Becker, and C. Schnörr,// to appear in: SIAM Journal on Imaging Science, 2014\\
+//F. Lenzen, J. Lellmann, F. Becker, and C. Schnörr,// SIAM Journal on Imaging Science, 2014\\
-[[http://arxiv.org/pdf/1407.0921v1.pdf| pdf (preprint)]]\\
+[[https://epubs.siam.org/doi/abs/10.1137/130938347|SIAM epubs]] | [[http://arxiv.org/pdf/1407.0921v1.pdf| pdf (preprint)]]\\
 <WRAP clear/>
@@ Line 173: / Line 310: @@
 {{aadm11.png }} **Sparse Template-Based Variational Image Segmentation**\\
-//D. Breitenreicher, J. Lellmann, and C. Schnörr},//
+//D. Breitenreicher, J. Lellmann, and C. Schnörr,//
 Advances in Adaptive Data Analysis, 2011\\
 {{:files:breitenreicher_lellmann_schnoerr_aada2011.pdf|pdf}} | [[http://www.worldscinet.com/aada/03/0301n02/S1793536911000805.html|AADA]]
@@ Line 208: / Line 345: @@
 ====== Invited and Workshop Talks ======
+  * J. Lellmann: **A tour on lifting for image analysis and beyond** Keynote at [[https://helmholtz-imaging.de/news/news-events/helmholtz-imaging-conference-2023-save-the-dates/|Helmholtz Imaging Conference, Hamburg, 2023.]]
+  * J. Lellmann: **Dynamical Optimal Transport and Functional Lifting** Invited talk at Mathematics and Image Analysis, Paris (virtual), 2021. {{ :mia_dynamicalot_lifting.pdf|pdf}}
+  * J. Lellmann: **Higher-Order Non-Smooth Optimization on Manifolds** Oberwolfach Mini-Workshop on Computational Optimization on Manifolds, 2020. {{ :lellmann_mfo2020.pdf|pdf}} | [[https://www.mfo.de/occasion/2047c|Oberwolfach Report]]
   * J. Lellmann: **Measure-Valued Variational Image Processing** Invited talk at IPAM Workshop on Geometric Processing as part of the long program "Geometry and Learning from Data in 3D and Beyond", UCLA, Los Angles, 2019. {{:files:lellmann_ipam2019.pdf|pdf}}
   * J. Lellmann: **Manifolds & Relaxation** Invited talk at CM2 Workshop on Manifold-Valued Image Processing, Kaiserslautern, 2016.
@@ Line 234: / Line 374: @@
 ====== Reviewing Activities ======
-  * IEEE Trans. Pattern Analysis and Machine Intelligence
+  * IEEE Trans. Pattern Analysis and Machine Intelligence (TPAMI)
-  * International Journal of Computer Vision
+  * International Journal of Computer Vision (IJCV)
-  * SIAM Journal on Imaging Sciences
+  * SIAM Journal on Imaging Sciences (SIIMS)
-  * Journal of Mathematical Imaging and Vision
+  * Journal of Mathematical Imaging and Vision (JMIV)
-  * European Conference on Computer Vision
+  * European Conference on Computer Vision (ECCV)
-  * International Conference on Computer Vision
+  * International Conference on Computer Vision (ICCV)
-  * SIAM Journal on Scientific Computing
+  * SIAM Journal on Scientific Computing (JSciComp)
+  * Inverse problems (IP)
+  * AMS Mathematical Reviews
+  * Computational Mathematics
+  * Numerical Algorithms
+  * IMA Journal of Numerical Analysis
+  * Calcolo
+  * Scale Space and Variational Methods (SSVM)
+  * Medical Imaging with Deep Learning (MIDL)
+  * Österreichischer Wissenschaftsfonds (FWF)
+  * Deutsche Forschungsgemeinschaft (DFG)
+  * Nature Scientific Reports
-====== Workshops and Conferences ======
+====== Workshop and Conference Organization ======
+  * Minisymposium on Model- and Data-Driven Approaches in Motion Analysis, SIAM Conference on Imaging Science, Atlanta, 2024
+  * International Conference on Medical Imaging with Deep Learning (MIDL), Lübeck, 2021
+  * Seventh International Conference on [[https://ssvm2019.mic.uni-luebeck.de/|Scale Space and Variational Methods in Computer Vision (SSVM)]], Hofgeismar, 2019
+  * Minisymposium on Optimal transport and Applications in Image Analysis, SIAM Conference on Imaging Science, Toronto, 2020
+  * Minisymposium on Optimal Transport in Image and Shape Analysis, International Conference on Scientific Computation And Differential Equations (SciCADE), Potsdam, 2015
+  * Minisymposium on Tensor- and Manifold-Valued Data, SIAM Conference on Imaging Science, Hong Kong, 2014
   * Workshop on [[http://www.damtp.cam.ac.uk/user/cbs31/Imaging_Workshop_Cambridge_September_2012/Workshop.html|Statistics, Learning and Variational Methods in Imaging]] at the University of Cambridge